API Reference

Autodoc-generated reference for every public module in exo2micro. Pulled directly from docstrings in the source.

• Pipeline Module
  • pipeline.py
  • SampleDye
• Alignment Module
  • alignment.py
  • boundary_correlation_coarse()
  • prealign_phase_correlation()
  • refine_icp()
  • refine_interior_ecc()
  • refine_interior_sift()
  • register_highorder()
• Plotting Module
  • plotting.py
  • plot_difference_histogram()
  • plot_difference_image()
  • plot_excess_heatmap()
  • plot_fine_alignment()
  • plot_im()
  • plot_pre_post_heatmap()
  • plot_pre_post_histograms()
  • plot_ratio_histogram_simple()
  • plot_registration()
  • plot_zoom()
  • plot_zoom_multi()
• Parallel Module
  • parallel.py
  • build_task_list()
  • print_summary()
  • process_one()
  • run_batch()
  • run_parallel()
  • run_serial()
  • run_subprocess()
• Utils Module
  • utils.py
  • MemoryTracker
  • MemoryWatchdog
  • TeeStdout
  • append_to_run_log()
  • build_clean_tissue_mask()
  • build_tissue_mask()
  • checkpoint_exists()
  • classify_raw_files()
  • clear_run_log()
  • diagnose_raw_layout()
  • discover_tasks()
  • equalize_pair()
  • estimate_gauss_sigma()
  • estimate_pipeline_memory()
  • estimate_pipeline_output_size()
  • filter_nan_gaussian_conserving()
  • format_bytes()
  • get_available_memory()
  • get_free_disk_space()
  • get_run_log_path()
  • load_checkpoint()
  • load_image_pair()
  • make_rgb_overlay()
  • normalize_image()
  • pad_images()
  • preflight_check()
  • read_run_log_tail()
  • robust_vmax()
  • save_checkpoint()
  • subtract_median()
  • survey_raw_channels()
  • tiff_to_fits()
  • tifffile_save()
  • trim_to_signal()
• Defaults Module
  • defaults.py
  • build_suffix()
  • params_from_suffix()
• Gui Module
• Legacy Module
  • legacy.py
  • compile_ims_old()
  • mask_em()
  • maskandsave()
  • optimize_subtraction()
  • plot_diff_comparison()
  • plot_im_sub()
  • plot_ratio_histogram()
  • plot_residual_histogram()
  • plot_signal_scatter()
  • plot_stretch_comparison()
  • plot_zoom_region()
  • register_loworder()
  • residuals_collapsed()